Format

Send to:

Choose Destination
    • Showing Current items.

    dhx16 DEAH-box helicase 16 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127179, updated on 20-Jun-2018

    Summary

    Official Symbol
    dhx16provided by Xenbase
    Official Full Name
    DEAH-box helicase 16provided by Xenbase
    Primary source
    Xenbase:XB-GENE-480525
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    dbp2; prp2; prp8; ddx16; prpf2; pro2014
    Orthologs

    Genomic context

    See dhx16 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (52397547..52417258)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668241.1 (43692131..43709811)

    Chromosome 8 - NC_030684.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene nurim Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene protein phosphatase 1 regulatory subunit 10

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Spliceosome, organism-specific biosystem (from KEGG)
      Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, conserved biosystem (from KEGG)
      Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...

    General protein information

    Preferred Names
    putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
    Names
    DEAH (Asp-Glu-Ala-His) box polypeptide 16
    NP_001116881.3
    XP_012823372.1
    XP_017951614.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123409.3NP_001116881.3  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

      Status: VALIDATED

      Source sequence(s)
      AL642536, AL851374, CR564594, CX430152, CX487463, CX927436, DN034365, DR851121, EL837313
      Conserved Domains (6) summary
      smart00487
      Location:386573
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:790874
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:408547
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:591721
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:9091007
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
      cl23750
      Location:149268
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030684.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      52397547..52417258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018096125.1XP_017951614.1  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

    2. XM_012967918.1XP_012823372.1  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

      Conserved Domains (6) summary
      smart00487
      Location:386573
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:817901
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:408547
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:591721
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:9361034
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
      cl23750
      Location:149268
      vATP-synt_E; ATP synthase (E/31 kDa) subunit
    Support Center