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    sumo3 small ubiquitin-like modifier 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125978, updated on 20-Jun-2018

    Summary

    Official Symbol
    sumo3provided by Xenbase
    Official Full Name
    small ubiquitin-like modifier 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1004211
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    smt3a; smt3h1; sumo-3
    Orthologs

    Genomic context

    See sumo3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (50316422..50324111)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668244.1 (32300188..32307877)

    Chromosome 9 - NC_030685.1Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 G2 Neighboring gene uncharacterized LOC108648888 Neighboring gene pituitary tumor-transforming 1 interacting protein, gene 1 Neighboring gene integrin subunit beta 2

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Nuclear pore complex, organism-specific biosystem (from KEGG)
      Nuclear pore complex, organism-specific biosystemStructural complex; Genetic information processing; RNA processing
    • Nuclear pore complex, conserved biosystem (from KEGG)
      Nuclear pore complex, conserved biosystemStructural complex; Genetic information processing; RNA processing
    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...

    General gene information

    Homology

    Clone Names

    • MGC69539

    General protein information

    Preferred Names
    small ubiquitin-related modifier 3
    Names
    SMT3 suppressor of mif two 3 homolog 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004853.1NP_001004853.1  small ubiquitin-related modifier 3

      See identical proteins and their annotated locations for NP_001004853.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074674
      UniProtKB/Swiss-Prot
      Q6DK72
      Conserved Domains (1) summary
      cd01763
      Location:792
      Sumo; Small ubiquitin-related modifier (SUMO)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030685.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      50316422..50324111
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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