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    LY96 lymphocyte antigen 96 [ Sus scrofa (pig) ]

    Gene ID: 100125555, updated on 8-Dec-2018

    Summary

    Gene symbol
    LY96
    Gene description
    lymphocyte antigen 96
    See related
    Ensembl:ENSSSCG00000006175
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    MD-2
    Expression
    Broad expression in spleen (RPKM 39.4), lung (RPKM 24.9) and 8 other tissues See more
    Orthologs

    Genomic context

    See LY96 in Genome Data Viewer
    Location:
    4; 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (61919806..61950712, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (67631664..67656017, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene junctophilin 1 Neighboring gene uncharacterized LOC110260273 Neighboring gene uncharacterized LOC106510048 Neighboring gene transmembrane protein 70 Neighboring gene elongin C

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104956.1NP_001098426.1  lymphocyte antigen 96

      See identical proteins and their annotated locations for NP_001098426.1

      Status: PROVISIONAL

      Source sequence(s)
      AB267811
      UniProtKB/TrEMBL
      A7BG67
      Related
      ENSSSCP00000006586.2, ENSSSCT00000006769.3
      Conserved Domains (1) summary
      cl00274
      Location:23153
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      61919806..61950712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021088438.1XP_020944097.1  lymphocyte antigen 96 isoform X1

      Conserved Domains (1) summary
      cl00274
      Location:23153
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
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