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    med25 mediator complex subunit 25 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100124831, updated on 20-Jun-2018

    Summary

    Symbol
    med25provided by Xenbase
    Full Name
    mediator complex subunit 25provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5830877
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See med25 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (109664854..109679997)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668240.1 (114888196..114903345, complement)

    Chromosome 7 - NC_030683.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 8 Neighboring gene Mps one binder kinase activator-like 2, gene 2 Neighboring gene uncharacterized protein mgc147475 Neighboring gene uncharacterized LOC101734953

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 25

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102796.1NP_001096266.1  mediator of RNA polymerase II transcription subunit 25

      See identical proteins and their annotated locations for NP_001096266.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135482
      UniProtKB/Swiss-Prot
      A4IHD9
      Conserved Domains (5) summary
      pfam11232
      Location:419566
      Med25; Mediator complex subunit 25 PTOV activation and synapsin 2
      pfam11235
      Location:223398
      Med25_SD1; Mediator complex subunit 25 synapsin 1
      pfam11244
      Location:703805
      Med25_NR-box; Mediator complex subunit 25 C-terminal NR box-containing
      pfam11265
      Location:10220
      Med25_VWA; Mediator complex subunit 25 von Willebrand factor type A
      cl25764
      Location:590734
      PAT1; Topoisomerase II-associated protein PAT1

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030683.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      109664854..109679997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018095222.1XP_017950711.1  mediator of RNA polymerase II transcription subunit 25 isoform X1

    2. XM_018095223.1XP_017950712.1  mediator of RNA polymerase II transcription subunit 25 isoform X1

    3. XM_018095221.1XP_017950710.1  mediator of RNA polymerase II transcription subunit 25 isoform X1

    4. XM_018095226.1XP_017950715.1  mediator of RNA polymerase II transcription subunit 25 isoform X4

    5. XM_018095228.1XP_017950717.1  mediator of RNA polymerase II transcription subunit 25 isoform X6

    6. XM_018095225.1XP_017950714.1  mediator of RNA polymerase II transcription subunit 25 isoform X3

    7. XM_018095224.1XP_017950713.1  mediator of RNA polymerase II transcription subunit 25 isoform X2

    8. XM_012965886.2XP_012821340.1  mediator of RNA polymerase II transcription subunit 25 isoform X7

      Conserved Domains (4) summary
      pfam11232
      Location:419565
      Med25; Mediator complex subunit 25 PTOV activation and synapsin 2
      pfam11235
      Location:223398
      Med25_SD1; Mediator complex subunit 25 synapsin 1
      pfam11244
      Location:708804
      Med25_NR-box; Mediator complex subunit 25 C-terminal NR box-containing
      pfam11265
      Location:10220
      Med25_VWA; Mediator complex subunit 25 von Willebrand factor type A
    9. XM_012965890.2XP_012821344.1  mediator of RNA polymerase II transcription subunit 25 isoform X8

      Conserved Domains (4) summary
      pfam11232
      Location:419564
      Med25; Mediator complex subunit 25 PTOV activation and synapsin 2
      pfam11235
      Location:223398
      Med25_SD1; Mediator complex subunit 25 synapsin 1
      pfam11244
      Location:707803
      Med25_NR-box; Mediator complex subunit 25 C-terminal NR box-containing
      pfam11265
      Location:10220
      Med25_VWA; Mediator complex subunit 25 von Willebrand factor type A
    10. XM_018095227.1XP_017950716.1  mediator of RNA polymerase II transcription subunit 25 isoform X5

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