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    PLXNB1 plexin B1 [ Ornithorhynchus anatinus (platypus) ]

    Gene ID: 100078327, updated on 8-Apr-2017

    Summary

    Gene symbol
    PLXNB1
    Gene description
    plexin B1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ornithorhynchus anatinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
    Orthologs

    Genomic context

    See PLXNB1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    103 current Ornithorhynchus_anatinus-5.0.1 (GCF_000002275.2) Unplaced Scaffold NW_001794363.1 (169258..209133)

    NW_001794363.1Genomic Context describing neighboring genes Neighboring gene ATR interacting protein Neighboring gene uncharacterized LOC103170734

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NW_001794363.1 Unplaced Scaffold Reference Ornithorhynchus_anatinus-5.0.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Axon guidance, organism-specific biosystem (from KEGG)
      Axon guidance, organism-specific biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...
    • Axon guidance, conserved biosystem (from KEGG)
      Axon guidance, conserved biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ornithorhynchus_anatinus-5.0.1 Primary Assembly

    Genomic

    1. NW_001794363.1 Reference Ornithorhynchus_anatinus-5.0.1 Primary Assembly

      Range
      169258..209133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007669944.1XP_007668134.1  plexin-B1

      Conserved Domains (7) summary
      smart00423
      Location:11171162
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd01180
      Location:11641255
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:480530
      PSI; Plexin repeat
      pfam08337
      Location:16411999
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam15671
      Location:684881
      PRR18; Proline-rich protein family 18
      cl15674
      Location:12561344
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:29479
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
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