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    COL16A1 collagen type XVI alpha 1 chain [ Equus caballus (horse) ]

    Gene ID: 100056083, updated on 26-Sep-2018

    Summary

    Official Symbol
    COL16A1provided by VGNC
    Official Full Name
    collagen type XVI alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:16726
    See related
    Ensembl:ENSECAG00000024119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs

    Genomic context

    See COL16A1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    72
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (24966357..25016989)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 2 NC_009145.2 (24966786..25017659)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene SPOC domain containing 1 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene penta-EF-hand domain containing 1 Neighboring gene hypocretin receptor 1 Neighboring gene tubulointerstitial nephritis antigen like 1

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    collagen alpha-1(XVI) chain
    Names
    collagen alpha 1(XVI) chain

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      24966357..25016989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023634572.1XP_023490340.1  collagen alpha-1(XVI) chain isoform X1

      Conserved Domains (2) summary
      pfam01391
      Location:760821
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    2. XM_023634577.1XP_023490345.1  collagen alpha-1(XVI) chain isoform X2

      Conserved Domains (2) summary
      pfam01391
      Location:760821
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    3. XM_023634583.1XP_023490351.1  collagen alpha-1(XVI) chain isoform X3

      Conserved Domains (2) summary
      pfam01391
      Location:760821
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    4. XM_023634588.1XP_023490356.1  collagen alpha-1(XVI) chain isoform X4

      Conserved Domains (3) summary
      pfam01391
      Location:760821
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:686953
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
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