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    ARNTL aryl hydrocarbon receptor nuclear translocator like [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100021673, updated on 2-Apr-2017

    Summary

    Gene symbol
    ARNTL
    Gene description
    aryl hydrocarbon receptor nuclear translocator like
    See related
    Ensembl:ENSMODG00000008708
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs

    Genomic context

    See ARNTL in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current MonDom5 (GCF_000002295.2) 5 NC_008805.1 (253586526..253698191)

    Chromosome 5 - NC_008805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103097728 Neighboring gene Ras association domain family member 10 Neighboring gene uncharacterized LOC107649388 Neighboring gene BTB domain containing 10 Neighboring gene uncharacterized LOC103097845 Neighboring gene parathyroid hormone

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_008805.1 Chromosome 5 Reference MonDom5 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Circadian rhythm, organism-specific biosystem (from KEGG)
      Circadian rhythm, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Circadian rhythm, conserved biosystem (from KEGG)
      Circadian rhythm, conserved biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Dopaminergic synapse, organism-specific biosystem (from KEGG)
      Dopaminergic synapse, organism-specific biosystemDopamine (DA) is an important and prototypical slow neurotransmitter in the mammalian brain, where it controls a variety of functions including locomotor activity, motivation and reward, learning an...
    • Dopaminergic synapse, conserved biosystem (from KEGG)
      Dopaminergic synapse, conserved biosystemDopamine (DA) is an important and prototypical slow neurotransmitter in the mammalian brain, where it controls a variety of functions including locomotor activity, motivation and reward, learning an...
    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General protein information

    Preferred Names
    aryl hydrocarbon receptor nuclear translocator-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Monodelphis domestica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MonDom5 Primary Assembly

    Genomic

    1. NC_008805.1 Reference MonDom5 Primary Assembly

      Range
      253586526..253698191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007497123.2XP_007497185.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_007497185.1

      Conserved Domains (5) summary
      smart00091
      Location:219278
      PAS; PAS domain
      cd00130
      Location:411506
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:144196
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:216323
      PAS; PAS fold
      pfam14598
      Location:409514
      PAS_11; PAS domain
    2. XM_007497130.2XP_007497192.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_007497192.1

      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
    3. XM_007497124.2XP_007497186.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

      Conserved Domains (5) summary
      smart00091
      Location:219278
      PAS; PAS domain
      cd00130
      Location:410505
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:144196
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:216323
      PAS; PAS fold
      pfam14598
      Location:408513
      PAS_11; PAS domain
    4. XM_007497121.2XP_007497183.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_007497183.1

      Conserved Domains (5) summary
      smart00091
      Location:219278
      PAS; PAS domain
      cd00130
      Location:411506
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:144196
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:216323
      PAS; PAS fold
      pfam14598
      Location:409514
      PAS_11; PAS domain
    5. XM_007497126.2XP_007497188.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

      Conserved Domains (5) summary
      smart00091
      Location:192251
      PAS; PAS domain
      cd00130
      Location:383478
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:117169
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:189296
      PAS; PAS fold
      pfam14598
      Location:381486
      PAS_11; PAS domain
    6. XM_007497128.2XP_007497190.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_007497190.1

      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
    7. XM_007497127.2XP_007497189.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_007497189.1

      Related
      ENSMODP00000034561.2, ENSMODT00000036149.2
      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
    8. XM_007497122.2XP_007497184.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_007497184.1

      Conserved Domains (5) summary
      smart00091
      Location:219278
      PAS; PAS domain
      cd00130
      Location:411506
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:144196
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:216323
      PAS; PAS fold
      pfam14598
      Location:409514
      PAS_11; PAS domain
    9. XM_016423446.1XP_016278932.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
    10. XM_007497129.2XP_007497191.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_007497191.1

      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
    11. XM_007497125.2XP_007497187.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

      Conserved Domains (5) summary
      smart00091
      Location:192251
      PAS; PAS domain
      cd00130
      Location:384479
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:117169
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:189296
      PAS; PAS fold
      pfam14598
      Location:382487
      PAS_11; PAS domain
    12. XM_016423447.1XP_016278933.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

      Conserved Domains (5) summary
      smart00091
      Location:183242
      PAS; PAS domain
      cd00130
      Location:375470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00010
      Location:108160
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:180287
      PAS; PAS fold
      pfam14598
      Location:373478
      PAS_11; PAS domain
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