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    CLOCK clock circadian regulator [ Meleagris gallopavo (turkey) ]

    Gene ID: 100008576, updated on 8-Apr-2017

    Summary

    Gene symbol
    CLOCK
    Gene description
    clock circadian regulator
    See related
    Ensembl:ENSMGAG00000011742
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Meleagris gallopavo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
    Orthologs

    Genomic context

    See CLOCK in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current Turkey_5.0 (GCF_000146605.2) 4 NC_015014.2 (42491188..42526695)
    Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 4 NC_015014.1 (47782711..47808103)

    Chromosome 4 - NC_015014.2Genomic Context describing neighboring genes Neighboring gene steroid 5 alpha-reductase 3 Neighboring gene transmembrane protein 165 Neighboring gene uncharacterized LOC104910749 Neighboring gene phosducin like 2

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General protein information

    Preferred Names
    circadian locomoter output cycles protein kaput
    Names
    clock homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Turkey_5.0 Primary Assembly

    Genomic

    1. NC_015014.2 Reference Turkey_5.0 Primary Assembly

      Range
      42491188..42526695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010710110.2XP_010708412.1  circadian locomoter output cycles protein kaput isoform X1

      See identical proteins and their annotated locations for XP_010708412.1

      Conserved Domains (3) summary
      cd00083
      Location:3286
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:275373
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:274377
      PAS_11; PAS domain
    2. XM_010710111.2XP_010708413.1  circadian locomoter output cycles protein kaput isoform X1

      See identical proteins and their annotated locations for XP_010708413.1

      Conserved Domains (3) summary
      cd00083
      Location:3286
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:275373
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:274377
      PAS_11; PAS domain
    3. XM_019614828.1XP_019470373.1  circadian locomoter output cycles protein kaput isoform X1

    4. XM_010710112.2XP_010708414.1  circadian locomoter output cycles protein kaput isoform X2

      UniProtKB/TrEMBL
      G5E7U8
      Conserved Domains (3) summary
      cd00083
      Location:3286
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:275373
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:274377
      PAS_11; PAS domain
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