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LOC4352014 ribulose bisphosphate carboxylase small chain A, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352014, updated on 3-Jun-2019

Summary

Gene symbol
LOC4352014
Gene description
ribulose bisphosphate carboxylase small chain A, chloroplastic-like
Locus tag
OSNPB_120291100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RBCS-A
Expression
Broad expression in leaves before flowering (RPKM 3568.0), flowers (RPKM 2624.3) and 4 other tissues See more

Genomic context

See LOC4352014 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (11262568..11263639)

Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene SAGA-associated factor 29 homolog A Neighboring gene helicase and polymerase-containing protein TEBICHI Neighboring gene ribulose bisphosphate carboxylase small chain A, chloroplastic-like Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
ribulose bisphosphate carboxylase small chain A, chloroplastic
Names
LOC_Os12g19381
LOC_Os12g19394
Os12g0291100
RuBisCO small subunit A
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
small subunit of ribulose-1,5-bisphosphate carboxylase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

    Range
    11262568..11263639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763922.1XP_015619408.1  ribulose bisphosphate carboxylase small chain A, chloroplastic

    UniProtKB/Swiss-Prot
    P18566
    UniProtKB/TrEMBL
    G8CTM6
    Conserved Domains (3) summary
    PLN02289
    Location:1167
    PLN02289; ribulose-bisphosphate carboxylase small chain
    cd03527
    Location:57166
    RuBisCO_small; Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco ...
    pfam12338
    Location:833
    RbcS; Ribulose-1,5-bisphosphate carboxylase small subunit
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