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LOC4349890 V-type proton ATPase 16 kDa proteolipid subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349890, updated on 3-Jun-2019

Summary

Gene symbol
LOC4349890
Gene description
V-type proton ATPase 16 kDa proteolipid subunit-like
Locus tag
OSNPB_110169900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
VATP-P1; OsJ_031784
Expression
Ubiquitous expression in flowers (RPKM 207.0), flower buds (RPKM 202.0) and 6 other tissues See more

Genomic context

See LOC4349890 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (3378052..3380305, complement)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349887 Neighboring gene aldehyde oxidase GLOX Neighboring gene long chain acyl-CoA synthetase 9, chloroplastic Neighboring gene fatty acid amide hydrolase-like Neighboring gene uncharacterized LOC4349892 Neighboring gene filament-like plant protein

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by Gramene

Component Evidence Code Pubs
cytoplasmic vesicle RCA
inferred from Reviewed Computational Analysis
more info
 
membrane RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
V-type proton ATPase 16 kDa proteolipid subunit
Names
LOC_Os11g06890
Os11g0169900
V-ATPase 16 kDa proteolipid subunit
Vacuolar proton pump 16 kDa proteolipid subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    3378052..3380305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761379.2XP_015616865.1  V-type proton ATPase 16 kDa proteolipid subunit

    UniProtKB/Swiss-Prot
    Q0IUB5
    Conserved Domains (3) summary
    TIGR01100
    Location:13121
    V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
    PRK06649
    Location:14155
    PRK06649; V-type ATP synthase subunit K; Validated
    pfam00137
    Location:94156
    ATP-synt_C; ATP synthase subunit C
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