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LOC4347932 protein SCAI homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347932, updated on 13-Oct-2018

Summary

Gene symbol
LOC4347932
Gene description
protein SCAI homolog
Locus tag
OSNPB_090573200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 56.9), roots after flowering (RPKM 56.5) and 6 other tissues See more

Genomic context

See LOC4347932 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22933986..22938994)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene type I inositol polyphosphate 5-phosphatase 2-like Neighboring gene uncharacterized LOC4347931 Neighboring gene putative gamma-glutamylcyclotransferase At3g02910 Neighboring gene uncharacterized LOC107278933

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
protein SCAI homolog; protein SCAI
Names
B1130E07.18-1
B1130E07.18-3
Os09g0573200

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22933986..22938994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756645.2XP_015612131.1  protein SCAI isoform X2

    Conserved Domains (1) summary
    pfam12070
    Location:35431
    DUF3550; Protein of unknown function (DUF3550/UPF0682)
  2. XM_015756644.1XP_015612130.1  protein SCAI homolog isoform X1

    UniProtKB/TrEMBL
    Q5Z480
    Conserved Domains (1) summary
    pfam12070
    Location:35551
    DUF3550; Protein of unknown function (DUF3550/UPF0682)
  3. XM_026020282.1XP_025876067.1  protein SCAI isoform X3

    Conserved Domains (1) summary
    pfam12070
    Location:35327
    SCAI; Protein SCAI
  4. XM_026020284.1XP_025876069.1  protein SCAI isoform X4

    Conserved Domains (1) summary
    pfam12070
    Location:35327
    SCAI; Protein SCAI
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