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LOC4345814 alpha-amylase isozyme 3D-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345814, updated on 3-Jun-2019

Summary

Gene symbol
LOC4345814
Gene description
alpha-amylase isozyme 3D-like
Locus tag
OSNPB_080473900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
AMY3D; AMY1.3; RAmy3D
Expression
Biased expression in mature seeds (RPKM 9.0), roots before flowering (RPKM 2.1) and 1 other tissue See more

Genomic context

See LOC4345814 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23340682..23343286)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345811 Neighboring gene alpha-amylase isozyme 3E-like Neighboring gene ethylene-responsive transcription factor ERF109 Neighboring gene uncharacterized LOC4345816

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General protein information

Preferred Names
alpha-amylase isozyme 3D
Names
1,4-alpha-D-glucan glucanohydrolase
LOC_Os08g36910
Os08g0473900
P0013B04.36-1
P0013B04.36-2
P0451G12.5-1
P0451G12.5-2
putative alpha-amylase isozyme 3E

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23340682..23343286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794560.2XP_015650046.1  alpha-amylase isozyme 3D

    UniProtKB/TrEMBL
    Q0J527
    Conserved Domains (3) summary
    smart00810
    Location:406465
    Alpha-amyl_C2; Alpha-amylase C-terminal beta-sheet domain
    PLN00196
    Location:61465
    PLN00196; alpha-amylase; Provisional
    cd11314
    Location:67415
    AmyAc_arch_bac_plant_AmyA; Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
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