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LOC4345650 uncharacterized LOC4345650 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345650, updated on 2-Mar-2021

Summary

Gene symbol
LOC4345650
Gene description
uncharacterized LOC4345650
Locus tag
OSNPB_080433200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 36.0), mature seeds (RPKM 24.4) and 6 other tissues See more
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Genomic context

See LOC4345650 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21010714..21013610)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107282020 Neighboring gene GDT1-like protein 5 Neighboring gene uncharacterized LOC4345651 Neighboring gene transcription factor MYB106 Neighboring gene uncharacterized LOC112939887 Neighboring gene NAC domain-containing protein 46

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
uncharacterized protein LOC4345650
Names
Os08g0433200
P0431A03.17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21010714..21013610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792992.2XP_015648478.1  uncharacterized protein LOC4345650

    UniProtKB/TrEMBL
    Q6ZA96
    Conserved Domains (1) summary
    pfam05875
    Location:85182
    Ceramidase
  2. XM_015792993.2XP_015648479.1  uncharacterized protein LOC4345650

    UniProtKB/TrEMBL
    Q6ZA96
    Conserved Domains (1) summary
    pfam05875
    Location:85182
    Ceramidase
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