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LOC4345576 homeobox-leucine zipper protein HOX5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345576, updated on 9-Aug-2018

Summary

Gene symbol
LOC4345576
Gene description
homeobox-leucine zipper protein HOX5-like
Locus tag
OSNPB_080416000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HOX5; OsHox5; OsJ_026223
Expression
Broad expression in roots before flowering (RPKM 63.1), flowers (RPKM 29.8) and 6 other tissues See more

Genomic context

See LOC4345576 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19884019..19888395, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene amino acid permease 4-like Neighboring gene DEAD-box ATP-dependent RNA helicase 29-like Neighboring gene uncharacterized LOC9270840

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
homeobox-leucine zipper protein HOX5
Names
HD-ZIP protein HOX5
Homeodomain transcription factor HOX5
LOC_Os08g32080
Os08g0416000
P0433E10.14-1
homeodomain leucine zipper protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    19884019..19888395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794772.2XP_015650258.1  homeobox-leucine zipper protein HOX5

    UniProtKB/Swiss-Prot
    Q6ZA74
    Conserved Domains (2) summary
    pfam00046
    Location:86139
    Homeobox; Homeobox domain
    pfam02183
    Location:141182
    HALZ; Homeobox associated leucine zipper
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