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LOC4344590 60S acidic ribosomal protein P0-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344590, updated on 9-Aug-2018

Summary

Gene symbol
LOC4344590
Gene description
60S acidic ribosomal protein P0-like
Locus tag
OSNPB_080130500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
YK704
Expression
Ubiquitous expression in flower buds (RPKM 347.1), mature seeds (RPKM 298.2) and 6 other tissues See more

Genomic context

See LOC4344590 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1720418..1723146, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344588 Neighboring gene 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene hydroxyproline O-galactosyltransferase GALT2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4344590 gene: The LOC4344590 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
structural constituent of ribosome RCA
inferred from Reviewed Computational Analysis
more info
 
Process Evidence Code Pubs
translational elongation RCA
inferred from Reviewed Computational Analysis
more info
 
Component Evidence Code Pubs
ribosome RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
60S acidic ribosomal protein P0
Names
LOC_Os08g03640
Os08g0130500
P0582D05.130-1
P0582D05.130-2
acidic ribosomal protein P0

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1720418..1723146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794555.2XP_015650041.1  60S acidic ribosomal protein P0

    UniProtKB/Swiss-Prot
    P41095
    Conserved Domains (3) summary
    cd05795
    Location:9185
    Ribosomal_P0_L10e; Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk ...
    PTZ00135
    Location:4319
    PTZ00135; 60S acidic ribosomal protein P0; Provisional
    pfam00428
    Location:235318
    Ribosomal_60s; 60s Acidic ribosomal protein
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