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LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343709, updated on 9-Aug-2018

Summary

Gene symbol
LOC4343709
Gene description
photosystem I chlorophyll a/b-binding protein 2, chloroplastic
Locus tag
OSNPB_070577600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1065_B06.19-1
Expression
Broad expression in leaves before flowering (RPKM 1420.4), roots after flowering (RPKM 818.0) and 4 other tissues See more

Genomic context

See LOC4343709 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23357688..23359391)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene constitutive photomorphogenesis protein 10 Neighboring gene adenylate cyclase, terminal-differentiation specific Neighboring gene succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like Neighboring gene bet1-like protein At4g14600

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Photosynthesis - antenna proteins, organism-specific biosystem (from KEGG)
    Photosynthesis - antenna proteins, organism-specific biosystemThe chlorophyll-binding subunits of photosystems I and II are internal antenna light-harvesting proteins of oxygenic photosynthesis. The antenna proteins that exist in phycobilisomes in cyanobacteria...
  • Photosynthesis - antenna proteins, conserved biosystem (from KEGG)
    Photosynthesis - antenna proteins, conserved biosystemThe chlorophyll-binding subunits of photosystems I and II are internal antenna light-harvesting proteins of oxygenic photosynthesis. The antenna proteins that exist in phycobilisomes in cyanobacteria...

General protein information

Preferred Names
photosystem I chlorophyll a/b-binding protein 2, chloroplastic
Names
Os07g0577600
putative photosystem I antenna protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23357688..23359391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791905.2XP_015647391.1  photosystem I chlorophyll a/b-binding protein 2, chloroplastic

    UniProtKB/TrEMBL
    Q6ZL95
    Conserved Domains (2) summary
    PLN00048
    Location:32260
    PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
    cl02879
    Location:1261
    Chloroa_b-bind; Chlorophyll A-B binding protein
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