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LOC4343069 26S proteasome non-ATPase regulatory subunit 8 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343069, updated on 9-Aug-2018

Summary

Gene symbol
LOC4343069
Gene description
26S proteasome non-ATPase regulatory subunit 8 homolog A
Locus tag
OSNPB_070435100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsRPN12
Expression
Ubiquitous expression in leaves after flowering (RPKM 79.5), flower buds (RPKM 78.9) and 6 other tissues See more

Genomic context

See LOC4343069 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14527455..14530535, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene protein CHROMATIN REMODELING 35 Neighboring gene methionine aminopeptidase 1B, chloroplastic Neighboring gene photosystem I reaction center subunit IV, chloroplastic Neighboring gene ribosome biogenesis protein BOP1 homolog Neighboring gene histone-lysine N-methyltransferase family member SUVH2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4343069 gene: The LOC4343069 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.
  • Orthologs

General protein information

Preferred Names
26S proteasome non-ATPase regulatory subunit 8 homolog A
Names
26S proteasome regulatory particle non-ATPase subunit12
Os07g0435100
P0673E01.24

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    14527455..14530535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792556.2XP_015648042.1  26S proteasome non-ATPase regulatory subunit 8 homolog A

    UniProtKB/TrEMBL
    Q8W423
    Conserved Domains (1) summary
    cl24019
    Location:118239
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
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