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LOC4342688 13 kDa prolamin C [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342688, updated on 16-Aug-2018

Summary

Gene symbol
LOC4342688
Gene description
13 kDa prolamin C
Locus tag
OSNPB_070206400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RP5; RP6; PROLM25; prolamin; OJ1119_B04.14; OJ1119_B04.16
Expression
Biased expression in milk grains (RPKM 14983.5) and mature seeds (RPKM 13982.2) See more

Genomic context

See LOC4342688 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5736864..5742489)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342686 Neighboring gene uncharacterized LOC9268206 Neighboring gene sugar transport protein 8 Neighboring gene cycloartenol-C-24-methyltransferase 1-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
13 kDa prolamin C
Names
13 kDa prolamin
13kDa prolamin
LOC_Os07g10570
Os07g0206400
Os07g0206500
preprolamin (AA -19 to 137)

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    5736864..5742489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790404.2XP_015645890.1  13 kDa prolamin C

    Conserved Domains (1) summary
    pfam13016
    Location:45104
    Gliadin; Cys-rich Gliadin N-terminal
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