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LOC4342117 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342117, updated on 3-Jun-2019

Summary

Gene symbol
LOC4342117
Gene description
1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like
Locus tag
OSNPB_060726400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SBE; Rbe1; Sbe1; Q-enzyme
Expression
Biased expression in milk grains (RPKM 1736.7) and roots after flowering (RPKM 95.6) See more

Genomic context

See LOC4342117 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30898176..30905822, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene chitinase 1-like Neighboring gene NAC domain-containing protein 22-like Neighboring gene protein LAZ1 Neighboring gene cyclin-B2-2-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General protein information

Preferred Names
1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
Names
1,4-alpha-glucan branching enzyme I
LOC_Os06g51084
Os06g0726400
P0017G10.8-1
P0017G10.8-2
P0548E04.28-1
P0548E04.28-2
branching enzyme
branching enzyme-I
putative 1,4-alpha-glucan branching enzyme I
starch-branching enzyme 1
starch-branching enzyme I

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    30898176..30905822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787625.2XP_015643111.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform X1

    UniProtKB/Swiss-Prot
    Q01401
    UniProtKB/TrEMBL
    Q0D9D0
    Conserved Domains (1) summary
    PLN02447
    Location:21785
    PLN02447; 1,4-alpha-glucan-branching enzyme
  2. XM_015787626.2XP_015643112.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform X2

    UniProtKB/Swiss-Prot
    Q01401
    UniProtKB/TrEMBL
    B7EAH2
    Conserved Domains (4) summary
    cd02854
    Location:64160
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:166572
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:1720
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:591693
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
  3. XM_015787627.2XP_015643113.1  1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic isoform X2

    UniProtKB/Swiss-Prot
    Q01401
    UniProtKB/TrEMBL
    B7EAH2
    Conserved Domains (4) summary
    cd02854
    Location:64160
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:166572
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:1720
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:591693
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
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