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LOC4342078 basic leucine zipper 19 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342078, updated on 3-Jun-2019

Summary

Gene symbol
LOC4342078
Gene description
basic leucine zipper 19
Locus tag
OSNPB_060716800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0541C02.4
Expression
Ubiquitous expression in leaves before flowering (RPKM 38.1), leaves after flowering (RPKM 33.0) and 6 other tissues See more

Genomic context

See LOC4342078 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30452428..30456214, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein 1 Neighboring gene endoplasmin homolog Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic Neighboring gene leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
basic leucine zipper 19
Names
Os06g0716800
P0481E08.37
transcription factor-like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    30452428..30456214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787019.2XP_015642505.1  basic leucine zipper 19

    UniProtKB/TrEMBL
    Q5Z8P6
    Conserved Domains (2) summary
    smart00338
    Location:97156
    BRLZ; basic region leucin zipper
    cd14686
    Location:103150
    bZIP; coiled coil [structural motif]
  2. XM_015787020.2XP_015642506.1  basic leucine zipper 19

    UniProtKB/TrEMBL
    Q5Z8P6
    Conserved Domains (2) summary
    smart00338
    Location:97156
    BRLZ; basic region leucin zipper
    cd14686
    Location:103150
    bZIP; coiled coil [structural motif]
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