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LOC4340680 signal recognition particle 9 kDa protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340680, updated on 9-Aug-2018

Summary

Gene symbol
LOC4340680
Gene description
signal recognition particle 9 kDa protein
Locus tag
OSNPB_060257200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 34.0), flower buds (RPKM 31.4) and 6 other tissues See more

Genomic context

See LOC4340680 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8194482..8198073, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At3g17950 Neighboring gene endoglucanase 17-like Neighboring gene ribonucleoside-diphosphate reductase small chain Neighboring gene GDSL esterase/lipase At5g37690

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Protein export, organism-specific biosystem (from KEGG)
    Protein export, organism-specific biosystemThe protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the ge...
  • Protein export, conserved biosystem (from KEGG)
    Protein export, conserved biosystemThe protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the ge...

General protein information

Preferred Names
signal recognition particle 9 kDa protein
Names
Os06g0257200
P0624H09.23-1
putative signal recognition particle 9 kDa protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    8194482..8198073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785776.2XP_015641262.1  signal recognition particle 9 kDa protein

    UniProtKB/TrEMBL
    Q652F6
    Conserved Domains (1) summary
    pfam05486
    Location:466
    SRP9-21; Signal recognition particle 9 kDa protein (SRP9)
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