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LOC4338644 annexin D4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338644, updated on 5-May-2019

Summary

Gene symbol
LOC4338644
Gene description
annexin D4
Locus tag
OSNPB_050382600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 9.1), roots before flowering (RPKM 6.5) and 4 other tissues See more

Genomic context

See LOC4338644 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18494331..18496592, complement)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene cation/H(+) antiporter 20 Neighboring gene cytochrome P450 94B3 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene annexin D3 Neighboring gene mitochondrial fission 1 protein A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
annexin D4
Names
Os05g0382600

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18494331..18496592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782141.2XP_015637627.1  annexin D4

    UniProtKB/TrEMBL
    B7E4J4
    Conserved Domains (1) summary
    cl02574
    Location:266314
    Annexin; Annexin
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