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LOC4338137 glycine-rich RNA-binding protein GRP2A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338137, updated on 9-Aug-2018

Summary

Gene symbol
LOC4338137
Gene description
glycine-rich RNA-binding protein GRP2A
Locus tag
OSNPB_050223200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 4.8), flower buds (RPKM 4.3) and 5 other tissues See more

Genomic context

See LOC4338137 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (7552487..7553883)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 12 Neighboring gene probable calcium-binding protein CML18 Neighboring gene glycine-rich RNA-binding protein blt801 Neighboring gene glycine-rich RNA-binding protein

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
glycine-rich RNA-binding protein GRP2A
Names
Os05g0223200

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    7552487..7553883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783323.2XP_015638809.1  glycine-rich RNA-binding protein GRP2A

    UniProtKB/TrEMBL
    Q5TKK2
    Conserved Domains (1) summary
    cl17169
    Location:24100
    RRM_SF; RNA recognition motif (RRM) superfamily
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