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LOC4336294 S-adenosylmethionine decarboxylase proenzyme-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336294, updated on 13-Oct-2018

Summary

Gene symbol
LOC4336294
Gene description
S-adenosylmethionine decarboxylase proenzyme-like
Locus tag
OSNPB_040498600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SAMDC; AdoMetDC; OsJ_004076
Expression
Ubiquitous expression in flower buds (RPKM 547.5), mature seeds (RPKM 512.0) and 6 other tissues See more

Genomic context

See LOC4336294 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24915029..24918140)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6b-2 Neighboring gene uncharacterized LOC9267297 Neighboring gene peroxidase 18 Neighboring gene cell division control protein 48 homolog B

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
S-adenosylmethionine decarboxylase proenzyme
Names
LOC_Os04g42090
OSJNBa0029H02.4
OSJNBa0067K08.23
Os04g0498600

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    24915029..24918140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025224.1XP_025881009.1  S-adenosylmethionine decarboxylase proenzyme

    Conserved Domains (1) summary
    PLN02524
    Location:10367
    PLN02524; S-adenosylmethionine decarboxylase
  2. XM_015780084.2XP_015635570.1  S-adenosylmethionine decarboxylase proenzyme

    UniProtKB/Swiss-Prot
    Q0JC10
    UniProtKB/TrEMBL
    B7ED49
    Conserved Domains (1) summary
    PLN02524
    Location:10367
    PLN02524; S-adenosylmethionine decarboxylase
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