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LOC4335293 prostaglandin E synthase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335293, updated on 3-Jun-2019

Summary

Gene symbol
LOC4335293
Gene description
prostaglandin E synthase 2
Locus tag
OSNPB_040244400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 29.9), flower buds (RPKM 29.4) and 6 other tissues See more

Genomic context

See LOC4335293 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (9336764..9345136)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene receptor homology region, transmembrane domain- and RING domain-containing protein 6 Neighboring gene putative methyltransferase C9orf114 homolog Neighboring gene putative methyltransferase C9orf114

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4335293 gene: The LOC4335293 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
prostaglandin E synthase 2
Names
Os04g0244400

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    9336764..9345136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781573.2XP_015637059.1  prostaglandin E synthase 2

    UniProtKB/TrEMBL
    Q7XW88
    Conserved Domains (3) summary
    cd03197
    Location:168313
    GST_C_mPGES2; C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2
    COG0625
    Location:95310
    GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
    cd03040
    Location:92164
    GST_N_mPGES2; GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal ...
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