Format

Send to:

Choose Destination

LOC4334524 probable protein phosphatase 2C 55 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334524, updated on 9-Aug-2018

Summary

Gene symbol
LOC4334524
Gene description
probable protein phosphatase 2C 55
Locus tag
OSNPB_030809300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 43.9), leaves after flowering (RPKM 42.0) and 6 other tissues See more

Genomic context

See LOC4334524 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33845857..33849842, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene sugar phosphate exchanger 3 Neighboring gene DNA-binding protein EMBP-1 Neighboring gene dentin sialophosphoprotein Neighboring gene protein phosphatase 2C 70

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
probable protein phosphatase 2C 55
Names
Os03g0809300

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    33845857..33849842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776641.2XP_015632127.1  probable protein phosphatase 2C 55

    UniProtKB/TrEMBL
    Q6ATQ2
    Conserved Domains (1) summary
    cl00120
    Location:250470
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Support Center