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LOC4334139 uncharacterized LOC4334139 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334139, updated on 13-Oct-2018

Summary

Gene symbol
LOC4334139
Gene description
uncharacterized LOC4334139
Locus tag
OSNPB_030752700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 39.7), roots before flowering (RPKM 34.9) and 6 other tissues See more

Genomic context

See LOC4334139 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31027480..31031611)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene two pore potassium channel a-like Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene MADS-box transcription factor 14-like Neighboring gene MADS-box transcription factor 34-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
uncharacterized protein LOC4334139
Names
Os03g0752700

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31027480..31031611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023853.1XP_025879638.1  uncharacterized protein LOC4334139

    Conserved Domains (2) summary
    cd06257
    Location:559603
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cl25732
    Location:437549
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_015775546.2XP_015631032.1  uncharacterized protein LOC4334139

    UniProtKB/TrEMBL
    Q7Y025
    Conserved Domains (2) summary
    cd06257
    Location:559603
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cl25732
    Location:437549
    SMC_N; RecF/RecN/SMC N terminal domain
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