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LOC4332906 probable serine/threonine-protein kinase PBL15 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332906, updated on 3-Jun-2019

Summary

Gene symbol
LOC4332906
Gene description
probable serine/threonine-protein kinase PBL15
Locus tag
OSNPB_030364400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves after flowering (RPKM 105.6), roots after flowering (RPKM 49.0) and 1 other tissue See more

Genomic context

See LOC4332906 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14206880..14209162)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene nodulation protein H Neighboring gene uncharacterized LOC4332905 Neighboring gene stomatal closure-related actin-binding protein 1 Neighboring gene probable mediator of RNA polymerase II transcription subunit 26b

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
probable serine/threonine-protein kinase PBL15
Names
Os03g0364400
serine/threonine-protein kinase At5g01020

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    14206880..14209162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772735.2XP_015628221.1  probable serine/threonine-protein kinase PBL15

    UniProtKB/TrEMBL
    Q10KZ7
    Conserved Domains (2) summary
    smart00221
    Location:114390
    STYKc; Protein kinase; unclassified specificity
    cd14066
    Location:114393
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
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