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LOC4332802 60S ribosomal protein L22-2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332802, updated on 9-Aug-2018

Summary

Gene symbol
LOC4332802
Gene description
60S ribosomal protein L22-2
Locus tag
OSNPB_030343500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bip108
Expression
Ubiquitous expression in flower buds (RPKM 128.7), flowers (RPKM 91.4) and 6 other tissues See more

Genomic context

See LOC4332802 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12798178..12799758, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar RNA-associated protein 14 Neighboring gene blue-light photoreceptor PHR2 Neighboring gene peter Pan-like protein Neighboring gene uncharacterized LOC4332804

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4332802 gene: The LOC4332802 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.
  • Orthologs

General protein information

Preferred Names
60S ribosomal protein L22-2
Names
BRI1-KD interacting protein 108
Os03g0343500

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    12798178..12799758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775439.2XP_015630925.1  60S ribosomal protein L22-2

    UniProtKB/TrEMBL
    Q762A6
    Conserved Domains (1) summary
    pfam01776
    Location:23126
    Ribosomal_L22e; Ribosomal L22e protein family
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