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LOC4332348 50S ribosomal protein L4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332348, updated on 4-Oct-2018

Summary

Gene symbol
LOC4332348
Gene description
50S ribosomal protein L4, chloroplastic
Locus tag
OSNPB_030265400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 112.4), flowers (RPKM 41.4) and 3 other tissues See more

Genomic context

See LOC4332348 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8753538..8756027)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene josephin-like protein Neighboring gene peroxisomal nicotinamide adenine dinucleotide carrier Neighboring gene coronatine-insensitive protein homolog 2-like Neighboring gene serine/arginine-rich splicing factor SR45a

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General protein information

Preferred Names
50S ribosomal protein L4, chloroplastic
Names
Os03g0265400

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    8753538..8756027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773142.2XP_015628628.1  50S ribosomal protein L4, chloroplastic

    UniProtKB/TrEMBL
    Q10NM5
    Conserved Domains (1) summary
    PRK05319
    Location:65275
    rplD; 50S ribosomal protein L4; Provisional
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