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LOC4331510 ubiquitin domain-containing protein DSK2a [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331510, updated on 9-Aug-2018

Summary

Gene symbol
LOC4331510
Gene description
ubiquitin domain-containing protein DSK2a
Locus tag
OSNPB_030131300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in milk grains (RPKM 33.8), roots after flowering (RPKM 29.4) and 6 other tissues See more

Genomic context

See LOC4331510 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1791628..1796366, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein NLP1-like Neighboring gene catalase-1 Neighboring gene poly(A) polymerase I Neighboring gene thiol-disulfide oxidoreductase LTO1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Protein processing in endoplasmic reticulum, organism-specific biosystem (from KEGG)
    Protein processing in endoplasmic reticulum, organism-specific biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
  • Protein processing in endoplasmic reticulum, conserved biosystem (from KEGG)
    Protein processing in endoplasmic reticulum, conserved biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...

General gene information

Homology

General protein information

Preferred Names
ubiquitin domain-containing protein DSK2a
Names
Os03g0131300

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1791628..1796366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774262.2XP_015629748.1  ubiquitin domain-containing protein DSK2a

    UniProtKB/TrEMBL
    Q10S80
    Conserved Domains (5) summary
    smart00727
    Location:366403
    STI1; Heat shock chaperonin-binding motif
    smart00213
    Location:1785
    UBQ; Ubiquitin homologues
    cd14399
    Location:493531
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    cl00155
    Location:1787
    UBQ; Ubiquitin-like proteins
    cl07893
    Location:286385
    AmyAc_family; Alpha amylase catalytic domain family
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