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LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330704, updated on 3-Jun-2019

Summary

Gene symbol
LOC4330704
Gene description
photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Locus tag
OSNPB_020744000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1734_E02.25
Expression
Biased expression in leaves before flowering (RPKM 137.9), roots after flowering (RPKM 37.2) and 3 other tissues See more

Genomic context

See LOC4330704 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31202204..31203690)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene protein BOBBER 2 Neighboring gene casparian strip membrane protein 4 Neighboring gene methyltransferase-like protein 7A Neighboring gene expansin-A5-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from PubChem

General protein information

Preferred Names
photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Names
Os02g0744000

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31202204..31203690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768501.2XP_015623987.1  photosynthetic NDH subunit of subcomplex B 4, chloroplastic

    UniProtKB/TrEMBL
    Q6Z2U3
    Conserved Domains (1) summary
    PLN00180
    Location:1176
    PLN00180; NDF6 (NDH-dependent flow 6); Provisional
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