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LOC4330248 aquaporin PIP1-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330248, updated on 3-Jun-2019

Summary

Gene symbol
LOC4330248
Gene description
aquaporin PIP1-1-like
Locus tag
OSNPB_020666200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RWC1; PIP1A; RWC-1; PIP1-1; PIP1.1; aquaporin; OsJ_007594; OJ1486_E07.10
Expression
Ubiquitous expression in flower buds (RPKM 237.5), flowers (RPKM 230.4) and 6 other tissues See more

Genomic context

See LOC4330248 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27044324..27047384)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.4 Neighboring gene uncharacterized LOC4330242 Neighboring gene U-box domain-containing protein 33-like Neighboring gene mitogen-activated protein kinase kinase kinase YODA Neighboring gene cytochrome P450 86A2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
aquaporin PIP1-1
Names
LOC_Os02g44630
Os02g0666200
P0461B08.25
Plasma membrane intrinsic protein 1-1
Plasma membrane intrinsic protein 1a
Water channel protein RWC1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    27044324..27047384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769907.1XP_015625393.1  aquaporin PIP1-1

    UniProtKB/Swiss-Prot
    Q6EU94
    UniProtKB/TrEMBL
    A0A1L2JKI3, B7SDI4
    Conserved Domains (1) summary
    pfam00230
    Location:47276
    MIP; Major intrinsic protein
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