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LOC4329919 putative RNA-binding protein Luc7-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329919, updated on 13-Oct-2018

Summary

Gene symbol
LOC4329919
Gene description
putative RNA-binding protein Luc7-like 2
Locus tag
OSNPB_020605600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1058_F07.16
Expression
Ubiquitous expression in roots after flowering (RPKM 23.4), flower buds (RPKM 20.3) and 6 other tissues See more

Genomic context

See LOC4329919 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23729250..23734406)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene BAG-associated GRAM protein 1 Neighboring gene uncharacterized LOC112936078 Neighboring gene TNF receptor-associated factor 6 Neighboring gene chitinase 6-like Neighboring gene uncharacterized LOC4329921

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
putative RNA-binding protein Luc7-like 2
Names
Os02g0605600
putative salt tolerance protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23729250..23734406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770651.1XP_015626137.1  putative RNA-binding protein Luc7-like 2 isoform X1

    UniProtKB/TrEMBL
    Q6K8R4
    Conserved Domains (2) summary
    COG5200
    Location:5322
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:2328
    LUC7; LUC7 N_terminus
  2. XM_026022682.1XP_025878467.1  putative RNA-binding protein Luc7-like 2 isoform X2

    Conserved Domains (1) summary
    cl27291
    Location:2285
    LUC7; LUC7 N_terminus
  3. XM_015770652.1XP_015626138.1  putative RNA-binding protein Luc7-like 2 isoform X3

    Conserved Domains (1) summary
    COG5200
    Location:5169
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

RNA

  1. XR_003240420.1 RNA Sequence

  2. XR_001543521.2 RNA Sequence

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