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LOC4328660 probable serine acetyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328660, updated on 3-Jun-2019

Summary

Gene symbol
LOC4328660
Gene description
probable serine acetyltransferase 1
Locus tag
OSNPB_020202800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1135_F06.10-2
Expression
Ubiquitous expression in leaves after flowering (RPKM 11.6), roots after flowering (RPKM 11.5) and 6 other tissues See more

Genomic context

See LOC4328660 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5748307..5753797, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g34160 Neighboring gene uncharacterized LOC4328658 Neighboring gene F-box/kelch-repeat protein At1g55270 Neighboring gene transcription factor HY5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from PubChem

General protein information

Preferred Names
probable serine acetyltransferase 1; protein FAR1-RELATED SEQUENCE 5
Names
Os02g0202800

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    5748307..5753797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023270.1XP_025879055.1  probable serine acetyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cl28262
    Location:31298
    PaaY; Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily [General function prediction only]
  2. XM_015771248.2XP_015626734.1  protein FAR1-RELATED SEQUENCE 5 isoform X1

    UniProtKB/TrEMBL
    Q0E2Z0
    Conserved Domains (5) summary
    PLN03097
    Location:71671
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam04434
    Location:570605
    SWIM; SWIM zinc finger
    pfam03101
    Location:89175
    FAR1; FAR1 DNA-binding domain
    pfam10551
    Location:294384
    MULE; MULE transposase domain
    pfam12484
    Location:657
    PE_PPE_C; Polymorphic PE/PPE proteins C terminal
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