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LOC4325064 F-box/LRR-repeat protein At1g67190 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325064, updated on 13-Oct-2018

Summary

Gene symbol
LOC4325064
Gene description
F-box/LRR-repeat protein At1g67190
Locus tag
OSNPB_010859600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0679C12.5
Expression
Ubiquitous expression in leaves after flowering (RPKM 19.8), roots after flowering (RPKM 19.5) and 6 other tissues See more

Genomic context

See LOC4325064 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37190441..37197799, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YnbD Neighboring gene transcription factor LG2-like Neighboring gene 60S ribosomal protein L10a Neighboring gene acidic endochitinase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
F-box/LRR-repeat protein At1g67190
Names
F-box protein-like
Os01g0859600
P0489B03.15

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37190441..37197799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766007.2XP_015621493.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:439
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126148
    LRR_RI; leucine-rich repeat [structural motif]
  2. XM_015766005.2XP_015621491.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:439
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126148
    LRR_RI; leucine-rich repeat [structural motif]
  3. XM_015766006.2XP_015621492.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:439
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126148
    LRR_RI; leucine-rich repeat [structural motif]
  4. XM_026022349.1XP_025878134.1  F-box/LRR-repeat protein At1g67190

    Conserved Domains (2) summary
    smart00256
    Location:439
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126148
    LRR_RI; leucine-rich repeat [structural motif]
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