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LOC4327476 aldo-keto reductase family 4 member C10 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327476, updated on 9-Aug-2018

Summary

Gene symbol
LOC4327476
Gene description
aldo-keto reductase family 4 member C10
Locus tag
OSNPB_010847700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 24.3), leaves after flowering (RPKM 20.4) and 6 other tissues See more

Genomic context

See LOC4327476 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36410644..36414610)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 5B1 Neighboring gene aldo-keto reductase family 4 member C10 Neighboring gene aldo-keto reductase family 4 member C10 Neighboring gene PRA1 family protein A1 Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

General protein information

Preferred Names
aldo-keto reductase family 4 member C10
Names
Os01g0847700
P0005H10.17
putative aldose reductase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    36410644..36414610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787251.1XP_015642737.1  aldo-keto reductase family 4 member C10

    UniProtKB/TrEMBL
    Q941T6
    Conserved Domains (2) summary
    COG0656
    Location:1278
    ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]
    COG0667
    Location:1282
    Tas; Predicted oxidoreductase (related to aryl-alcohol dehydrogenase) [General function prediction only]
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