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LOC4326887 probable glutathione S-transferase GSTF2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326887, updated on 9-Aug-2018

Summary

Gene symbol
LOC4326887
Gene description
probable glutathione S-transferase GSTF2
Locus tag
OSNPB_010764000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GSTF2; GST-II; P0403C05.5
Expression
Ubiquitous expression in flowers (RPKM 428.2), roots before flowering (RPKM 363.1) and 6 other tissues See more

Genomic context

See LOC4326887 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32148154..32152111, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269364 Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 3 Neighboring gene inactive protein FON2 SPARE1-like Neighboring gene uncharacterized LOC4326888

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General protein information

Preferred Names
probable glutathione S-transferase GSTF2
Names
LOC_Os01g55830
Os01g0764000
P0403C05.4-1
P0403C05.4-2
Rgst II
glutathione S-transferase 2
glutathione S-transferase-like
putative glutathione transferase I

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    32148154..32152111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758937.1XP_015614423.1  probable glutathione S-transferase GSTF2

    UniProtKB/Swiss-Prot
    O82451
    UniProtKB/TrEMBL
    Q0JJ25
    Conserved Domains (3) summary
    PLN02395
    Location:4215
    PLN02395; glutathione S-transferase
    cd03187
    Location:90208
    GST_C_Phi; C-terminal, alpha helical domain of Class Phi Glutathione S-transferases
    cd03053
    Location:378
    GST_N_Phi; GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide ...
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