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LOC4325621 aspartate aminotransferase, cytoplasmic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325621, updated on 4-Oct-2018

Summary

Gene symbol
LOC4325621
Gene description
aspartate aminotransferase, cytoplasmic-like
Locus tag
OSNPB_010760600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in milk grains (RPKM 444.3), mature seeds (RPKM 256.4) and 6 other tissues See more

Genomic context

See LOC4325621 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31998727..32003685, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 9 Neighboring gene uncharacterized LOC4325620 Neighboring gene homeobox-leucine zipper protein ROC9-like Neighboring gene probable protein ABIL5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4325621 gene: The LOC4325621 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
L-aspartate:2-oxoglutarate aminotransferase activity IEP
Inferred from Expression Pattern
more info
PubMed 
L-aspartate:2-oxoglutarate aminotransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
L-aspartate:2-oxoglutarate aminotransferase activity RCA
inferred from Reviewed Computational Analysis
more info
 
transaminase activity RCA
inferred from Reviewed Computational Analysis
more info
 
Process Evidence Code Pubs
alanine metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
aspartate metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
cellular amino acid metabolic process RCA
inferred from Reviewed Computational Analysis
more info
 
nitrogen compound metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
tricarboxylic acid cycle ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
aspartate aminotransferase, cytoplasmic
Names
LOC_Os01g55540
Os01g0760600
P0460E08.21
P0512C01.10
Transaminase A
putative aspartate aminotransferase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31998727..32003685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765674.2XP_015621160.1  aspartate aminotransferase, cytoplasmic

    UniProtKB/Swiss-Prot
    P37833
    UniProtKB/TrEMBL
    Q0JJ47
    Conserved Domains (2) summary
    PLN02397
    Location:49460
    PLN02397; aspartate transaminase
    pfam00155
    Location:84452
    Aminotran_1_2; Aminotransferase class I and II
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