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LOC4324115 guanine nucleotide-binding protein subunit beta-like protein A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324115, updated on 10-Aug-2018

Summary

Gene symbol
LOC4324115
Gene description
guanine nucleotide-binding protein subunit beta-like protein A
Locus tag
OSNPB_010686800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RWD; GPB-LR; RACK1A
Expression
Ubiquitous expression in flower buds (RPKM 193.6), flowers (RPKM 119.1) and 6 other tissues See more

Genomic context

See LOC4324115 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28330787..28333319)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SYF1 pseudogene Neighboring gene uncharacterized LOC9269132 Neighboring gene uncharacterized LOC4324116 Neighboring gene acidic endochitinase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Homology

General protein information

Preferred Names
guanine nucleotide-binding protein subunit beta-like protein A
Names
LOC_Os01g49290
Os01g0686800
Receptor for activated C kinase 1A
q group of receptor for activated C-kinase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    28330787..28333319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765435.2XP_015620921.1  guanine nucleotide-binding protein subunit beta-like protein A

    UniProtKB/Swiss-Prot
    P49027
    Conserved Domains (3) summary
    COG2319
    Location:15331
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:16326
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:2173
    7WD40; WD40 repeat [structural motif]
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