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LOC4325273 30S ribosomal protein S20, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325273, updated on 9-Aug-2018

Summary

Gene symbol
LOC4325273
Gene description
30S ribosomal protein S20, chloroplastic
Locus tag
OSNPB_010678600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 154.6), flowers (RPKM 58.9) and 4 other tissues See more

Genomic context

See LOC4325273 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27922290..27924338)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325271 Neighboring gene two pore calcium channel protein 1-like Neighboring gene transcription factor-like protein DPB Neighboring gene heavy metal-associated isoprenylated plant protein 4

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General protein information

Preferred Names
30S ribosomal protein S20, chloroplastic
Names
Os01g0678600

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    27922290..27924338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768661.2XP_015624147.1  30S ribosomal protein S20, chloroplastic

    UniProtKB/TrEMBL
    Q0JKF5
    Conserved Domains (1) summary
    cl00384
    Location:90179
    Ribosomal_S20p; Ribosomal protein S20
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