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LOC4324197 U-box domain-containing protein 35 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324197, updated on 9-Aug-2018

Summary

Gene symbol
LOC4324197
Gene description
U-box domain-containing protein 35
Locus tag
OSNPB_010581400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flower buds (RPKM 199.5) and flowers (RPKM 71.4) See more

Genomic context

See LOC4324197 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22538737..22542155)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324195 Neighboring gene lycopene epsilon cyclase, chloroplastic Neighboring gene uncharacterized LOC9270742 Neighboring gene uncharacterized LOC9272369

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
U-box domain-containing protein 35
Names
B1097D05.17
Os01g0581400
serine threonine kinase 1-like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22538737..22542155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766711.1XP_015622197.1  U-box domain-containing protein 35

    UniProtKB/TrEMBL
    Q5ZB74
    Conserved Domains (3) summary
    cd01989
    Location:28170
    STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
    pfam00069
    Location:458711
    Pkinase; Protein kinase domain
    cl21453
    Location:464724
    PKc_like; Protein Kinases, catalytic domain
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