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LOC4326196 B2 protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326196, updated on 3-Jun-2019

Summary

Gene symbol
LOC4326196
Gene description
B2 protein
Locus tag
OSNPB_010550300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 775.5), flowers (RPKM 555.9) and 5 other tissues See more

Genomic context

See LOC4326196 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (20599375..20602276, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 6 Neighboring gene F-box protein SKIP8 Neighboring gene chromosome partition protein Smc Neighboring gene uncharacterized LOC4325841

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
B2 protein
Names
B1156H12.27-2
OSJNBa0024F24.12-2
Os01g0550300
putative GDA2 protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20599375..20602276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758895.2XP_015614381.1  B2 protein

    UniProtKB/TrEMBL
    Q5JK83
    Conserved Domains (1) summary
    smart00767
    Location:216347
    DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death
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