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LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324479, updated on 3-Jun-2019

Summary

Gene symbol
LOC4324479
Gene description
oxygen-evolving enhancer protein 1, chloroplastic
Locus tag
OSNPB_010501800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 1909.0), roots after flowering (RPKM 1026.2) and 4 other tissues See more

Genomic context

See LOC4324479 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17349316..17350787)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 9 Neighboring gene sec-independent protein translocase protein TATC, chloroplastic-like Neighboring gene uncharacterized LOC107280859 Neighboring gene palmitoyl-acyl carrier protein thioesterase, chloroplastic

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
oxygen-evolving enhancer protein 1, chloroplastic
Names
B1080D07.27
Os01g0501800
putative 33kDa oxygen evolving protein of photosystem II

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    17349316..17350787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763107.2XP_015618593.1  oxygen-evolving enhancer protein 1, chloroplastic

    UniProtKB/TrEMBL
    Q943W1
    Conserved Domains (1) summary
    PLN00037
    Location:21333
    PLN00037; photosystem II oxygen-evolving enhancer protein 1; Provisional
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