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LOC4327213 cytosolic isocitrate dehydrogenase [NADP] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327213, updated on 9-Aug-2018

Summary

Gene symbol
LOC4327213
Gene description
cytosolic isocitrate dehydrogenase [NADP]
Locus tag
OSNPB_010248400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 55.5), leaves after flowering (RPKM 45.7) and 6 other tissues See more

Genomic context

See LOC4327213 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8170314..8175905)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene stigma-specific STIG1-like protein 3 Neighboring gene pathogen-related protein Neighboring gene pathogen-related protein Neighboring gene DNA replication complex GINS protein PSF2 Neighboring gene geranylgeranyl pyrophosphate synthase 7, chloroplastic

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

  • Homologs of the LOC4327213 gene: The LOC4327213 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
cytosolic isocitrate dehydrogenase [NADP]
Names
Os01g0248400
P0034C11.22
putative NADP-dependent isocitrate dehydrogenase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    8170314..8175905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758671.1XP_015614157.1  cytosolic isocitrate dehydrogenase [NADP]

    UniProtKB/TrEMBL
    Q9XHX4
    Conserved Domains (1) summary
    PLN00103
    Location:1408
    PLN00103; isocitrate dehydrogenase (NADP+); Provisional
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