U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zinc ion binding / DNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836490, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
zinc ion binding / DNA binding protein
Primary source
TAIR:AT5G63700
Locus tag
AT5G63700
See related
Araport:AT5G63700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBK5.18; MBK5_18
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (25493707..25497764, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pyruvate kinase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001345604.1
NM_125765.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc ion binding / DNA binding protein
NP_201175.2
  • zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25493707..25497764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125765.3 → NP_201175.2  zinc ion binding / DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201175.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8L2, F4KAT5, Q9FFP4
    Conserved Domains (3) summary
    smart00719
    Location:401 → 500
    Plus3; Short conserved domain in transcriptional regulators
    cd15568
    Location:24 → 69
    PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    cd10567
    Location:261 → 337
    SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins

  2. NM_001345604.1 → NP_001332307.1  zinc ion binding / DNA binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UA88, A0A1P8BGI4
    Conserved Domains (3) summary
    smart00719
    Location:401 → 500
    Plus3; Short conserved domain in transcriptional regulators
    cd15568
    Location:24 → 69
    PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    cd10567
    Location:261 → 337
    SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.