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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827016, updated on 18-Sep-2024
Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT4G13820
Locus tag
AT4G13820
See related
Araport:AT4G13820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18A5.210; F18A5_210
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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (8007950..8010858, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene magnesium transporter NIPA (DUF803) Neighboring gene receptor like protein 47 Neighboring gene DNAJ-like 20 Neighboring gene HXXXD-type acyl-transferase family protein

Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

NM_117456.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
Preferred Names
Leucine-rich repeat (LRR) family protein
NP_193118.2
  • Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8007950..8010858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117456.6 → NP_193118.2  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193118.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2F291, Q8RXQ6
    Conserved Domains (4) summary
    cd00116
    Location:419 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:134 → 157
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:31 → 78
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:109 → 168
    LRR_8; Leucine rich repeat
Nucleotide Protein
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