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XTH9 xyloglucan endotransglucosylase/hydrolase 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828024, updated on 6-May-2021

Summary

Gene symbol
XTH9
Gene description
xyloglucan endotransglucosylase/hydrolase 9
Primary source
Araport:AT4G03210
Locus tag
AT4G03210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4C21.14; F4C21_14; xyloglucan endotransglucosylase/hydrolase 9
Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
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Genomic context

See XTH9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (1415617..1417444)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene catalytics Neighboring gene Coproporphyrinogen III oxidase Neighboring gene Protein with RNI-like/FBD-like domain Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase Neighboring gene frataxin-like protein

General gene information

NM_001036504.1
NM_116559.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 
enables xyloglucan:xyloglucosyl transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within plant-type secondary cell wall biogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within xylem development IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
xyloglucan endotransglucosylase/hydrolase 9
NP_001031581.1
  • xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_192230.1
  • xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1415617..1417444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116559.3NP_192230.1  xyloglucan endotransglucosylase/hydrolase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192230.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDW9
    UniProtKB/TrEMBL
    A0A178V222, C0SVH2
    Conserved Domains (1) summary
    cd02176
    Location:25284
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
  2. NM_001036504.1NP_001031581.1  xyloglucan endotransglucosylase/hydrolase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031581.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JI68
    Conserved Domains (1) summary
    cd02176
    Location:15256
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
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