U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Papain family cysteine protease [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824659, updated on 18-Sep-2024
Official Full Name
Papain family cysteine protease
Primary source
TAIR:AT3G54940
Locus tag
AT3G54940
See related
Araport:AT3G54940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (20354351..20356363)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene patatin-like protein 6 Neighboring gene PDI-like 1-3

Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Homology

NM_001339706.1
NM_115351.7

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
Preferred Names
Papain family cysteine protease
NP_567010.5
  • Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, carpel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 7716 Blast hits to 7658 proteins in 713 species: Archae - 63; Bacteria - 225; Metazoa - 3256; Fungi - 4; Plants - 1843; Viruses - 138; Other Eukaryotes - 2187 (source: NCBI BLink).

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20354351..20356363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115351.7 → NP_567010.5  Papain family cysteine protease [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567010.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EAJ4, Q8VYS0, Q9SV42
    UniProtKB/TrEMBL
    A0A178V5N1, A0A5S9XL70
    Conserved Domains (2) summary
    smart00848
    Location:51 → 106
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:137 → 361
    Peptidase_C1; Papain family cysteine protease

  2. NM_001339706.1 → NP_001327920.1  Papain family cysteine protease [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTT3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYS0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools