U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SDP6 FAD-dependent oxidoreductase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820199, updated on 15-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
SDP6
Gene description
FAD-dependent oxidoreductase family protein
Primary source
Araport:AT3G10370
Locus tag
AT3G10370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SUGAR-DEPENDENT 6
Summary
mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SDP6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (3216339..3219270)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phenylalanine ammonia-lyase 4 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene pumilio 4 Neighboring gene subunit of exocyst complex 8 Neighboring gene protein FLOWERING locus D-like protein Neighboring gene vacuolar acid trehalase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis. Quettier AL, et al. Plant Physiol, 2008 Sep. PMID 18599644, Free PMC Article
  2. Identification of a mitochondrial glycerol-3-phosphate dehydrogenase from Arabidopsis thaliana: evidence for a mitochondrial glycerol-3-phosphate shuttle in plants. Shen W, et al. FEBS Lett, 2003 Feb 11. PMID 12586344
  3. Glycerol-3-phosphate metabolism in wheat contributes to systemic acquired resistance against Puccinia striiformis f. sp. tritici. Yang Y, et al. PLoS One, 2013. PMID 24312351, Free PMC Article
  4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase hypothesized to participate in a mitochondrial G3P shuttle by cooperating with the cytosolic NAD-dependent GPDH protein GPDHC1
    Title: SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_111872.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycerol-3-phosphate dehydrogenase (quinone) activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glycerol catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within glycerol catabolic process TAS
Traceable Author Statement
more info
 PubMed 
involved_in glycerol-3-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glycerophosphate shuttle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within glycerophosphate shuttle TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
part_of glycerol-3-phosphate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
FAD-dependent oxidoreductase family protein
NP_187648.1
  • SUGAR-DEPENDENT 6 (SDP6); FUNCTIONS IN: glycerol-3-phosphate dehydrogenase activity; INVOLVED IN: glycerophosphate shuttle, glycerol metabolic process, glycerol catabolic process; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), FAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR000447); Has 7040 Blast hits to 7029 proteins in 1867 species: Archae - 83; Bacteria - 4925; Metazoa - 247; Fungi - 177; Plants - 55; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3216339..3219270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111872.6 → NP_187648.1  FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187648.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SS48
    UniProtKB/TrEMBL
    A0A178VGW1, A0A5S9XAZ6
    Conserved Domains (1) summary
    PLN02464
    Location:1 → 629
    PLN02464; glycerol-3-phosphate dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SS48.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools